Package: jrich 0.60-36.02
jrich: Jack-Knife Support for Evolutionary Distinctiveness Indices I and W
These functions calculate the taxonomic measures presented in Miranda-Esquivel (2016). The package introduces Jack-knife resampling in evolutionary distinctiveness prioritization analysis, as a way to evaluate the support of the ranking in area prioritization, and the persistence of a given area in a conservation analysis. The algorithm is described in: Miranda-Esquivel, D (2016) <doi:10.1007/978-3-319-22461-9_11>.
Authors:
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jrich.pdf |jrich.html✨
jrich/json (API)
NEWS
| # Install 'jrich' in R: |
| install.packages('jrich', repos = c('https://dmirandae.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dmirandae/jrich/issues
- Multitaxon1 - Multitaxon example.
- distribution - Distribution of five taxa.
- taxon1 - A tree and the distribution of the taxa.
- tree - A tree with five terminals.
Last updated 9 years agofrom:1358688eb1. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 22 2024 |
| R-4.5-win | OK | Nov 22 2024 |
| R-4.5-linux | OK | Nov 22 2024 |
| R-4.4-win | OK | Nov 22 2024 |
| R-4.4-mac | OK | Nov 22 2024 |
| R-4.3-win | OK | Nov 22 2024 |
| R-4.3-mac | OK | Nov 22 2024 |
Exports:Best.IndexCalculate.IndexChildrenIndexIIndexWMulti.Index.CalcMulti.JackRank.IndicesRead.DataSum.Indices.2.Topologies
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Jack-knife indices in a single topology m times and evaluates a success rule. | Best.Index |
| Indices values and Jack-knife indices for a single topology. | Calculate.Index |
| Children of an internal node. | Children |
| Distribution of five taxa. | distribution |
| I index value for a single topology. | IndexI |
| W index value for a single topology. | IndexW |
| Jack-knife indices in n topologies one time. | Multi.Index.Calc |
| Jack-knife indices in n topologies m times. | Multi.Jack |
| Multitaxon example. | Multitaxon1 |
| Rank indices. | Rank.Indices |
| Read distributions. | Read.Data |
| Sums two tables with indices values. | Sum.Indices.2.Topologies |
| A tree and the distribution of the taxa. | taxon1 |
| A tree with five terminals. | tree |
